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Single-cell epigenome analysis reveals age-associated decay of heterochromatin domains in excitatory neurons in the mouse brain.
Cell Res. 2022 Nov;32(11):1008-1021. doi: 10.1038/s41422-022-00719-6. Epub 2022 Oct 7.
Cell Res. 2022.
PMID: 36207411
Free PMC article.
Single-cell analysis of chromatin accessibility in the adult mouse brain.
Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, Lin L, Yang Q, Lee S, Li B, Kuan S, Liu H, Zhou J, Pinto-Duarte A, Lucero J, Osteen J, Nunn M, Smith KA, Tasic B, Yao Z, Zeng H, Wang Z, Shang J, Behrens MM, Ecker JR, Wang A, Preissl S, Ren B.
Zu S, et al. Among authors: amaral ml.
Nature. 2023 Dec;624(7991):378-389. doi: 10.1038/s41586-023-06824-9. Epub 2023 Dec 13.
Nature. 2023.
PMID: 38092917
Free PMC article.
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BART: bioinformatics array research tool.
Amaral ML, Erikson GA, Shokhirev MN.
Amaral ML, et al.
BMC Bioinformatics. 2018 Aug 8;19(1):296. doi: 10.1186/s12859-018-2308-x.
BMC Bioinformatics. 2018.
PMID: 30089462
Free PMC article.
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Dynamic enhancer landscapes in human craniofacial development.
Rajderkar SS, Paraiso K, Amaral ML, Kosicki M, Cook LE, Darbellay F, Spurrell CH, Osterwalder M, Zhu Y, Wu H, Afzal SY, Blow MJ, Kelman G, Barozzi I, Fukuda-Yuzawa Y, Akiyama JA, Afzal V, Tran S, Plajzer-Frick I, Novak CS, Kato M, Hunter RD, von Maydell K, Wang A, Lin L, Preissl S, Lisgo S, Ren B, Dickel DE, Pennacchio LA, Visel A.
Rajderkar SS, et al. Among authors: amaral ml.
Nat Commun. 2024 Mar 6;15(1):2030. doi: 10.1038/s41467-024-46396-4.
Nat Commun. 2024.
PMID: 38448444
Free PMC article.
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Cell Type- and Tissue-specific Enhancers in Craniofacial Development.
Rajderkar SS, Paraiso K, Amaral ML, Kosicki M, Cook LE, Darbellay F, Spurrell CH, Osterwalder M, Zhu Y, Wu H, Afzal SY, Blow MJ, Kelman G, Barozzi I, Fukuda-Yuzawa Y, Akiyama JA, Afzal V, Tran S, Plajzer-Frick I, Novak CS, Kato M, Hunter RD, von Maydell K, Wang A, Lin L, Preissl S, Lisgo S, Ren B, Dickel DE, Pennacchio LA, Visel A.
Rajderkar SS, et al. Among authors: amaral ml.
bioRxiv [Preprint]. 2023 Jun 26:2023.06.26.546603. doi: 10.1101/2023.06.26.546603.
bioRxiv. 2023.
PMID: 37425964
Free PMC article.
Preprint.
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Chromatin accessibility underlies synthetic lethality of SWI/SNF subunits in ARID1A-mutant cancers.
Kelso TWR, Porter DK, Amaral ML, Shokhirev MN, Benner C, Hargreaves DC.
Kelso TWR, et al. Among authors: amaral ml.
Elife. 2017 Oct 2;6:e30506. doi: 10.7554/eLife.30506.
Elife. 2017.
PMID: 28967863
Free PMC article.
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Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.
Zhang Y, Li T, Preissl S, Amaral ML, Grinstein JD, Farah EN, Destici E, Qiu Y, Hu R, Lee AY, Chee S, Ma K, Ye Z, Zhu Q, Huang H, Fang R, Yu L, Izpisua Belmonte JC, Wu J, Evans SM, Chi NC, Ren B.
Zhang Y, et al. Among authors: amaral ml.
Nat Genet. 2019 Sep;51(9):1380-1388. doi: 10.1038/s41588-019-0479-7. Epub 2019 Aug 19.
Nat Genet. 2019.
PMID: 31427791
Free PMC article.
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